Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX3P41225 ACTG1P3-201ENST00000431775 1114 ntBASIC14.25□□□□□ -0.13
SOX3P41225 GPR53P-205ENST00000457298 1084 ntBASIC14.25□□□□□ -0.13
SOX3P41225 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SOX3P41225 AP001582.1-201ENST00000525856 295 ntBASIC14.25□□□□□ -0.13
SOX3P41225 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 CLUHP6-201ENST00000580789 941 ntBASIC14.25□□□□□ -0.13
SOX3P41225 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX3P41225 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.25□□□□□ -0.13
SOX3P41225 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.25□□□□□ -0.13
SOX3P41225 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.25□□□□□ -0.13
SOX3P41225 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SOX3P41225 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SOX3P41225 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 SBF1P1-201ENST00000444527 5631 ntBASIC14.25□□□□□ -0.13
SOX3P41225 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
SOX3P41225 AC140479.7-201ENST00000636301 2332 ntBASIC14.24□□□□□ -0.13
SOX3P41225 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.24□□□□□ -0.13
SOX3P41225 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.24□□□□□ -0.13
SOX3P41225 USP32P1-208ENST00000506594 1164 ntBASIC14.24□□□□□ -0.13
SOX3P41225 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.24□□□□□ -0.13
SOX3P41225 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
SOX3P41225 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 KRT17P8-201ENST00000540749 863 ntBASIC14.24□□□□□ -0.13
SOX3P41225 HILS1-202ENST00000545329 423 ntBASIC14.24□□□□□ -0.13
SOX3P41225 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.24□□□□□ -0.13
SOX3P41225 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.24□□□□□ -0.13
SOX3P41225 AL162274.1-201ENST00000617191 1098 ntBASIC14.24□□□□□ -0.13
SOX3P41225 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 LINC01230-201ENST00000625222 3017 ntBASIC14.24□□□□□ -0.13
SOX3P41225 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX3P41225 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX3P41225 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
SOX3P41225 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX3P41225 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms