Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 FO393414.2-201ENST00000405153 598 ntBASIC14.45□□□□□ -0.1
MSX2P35548 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
MSX2P35548 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX2P35548 AL450487.1-201ENST00000426799 995 ntBASIC14.45□□□□□ -0.1
MSX2P35548 AC022447.6-201ENST00000515522 438 ntBASIC14.45□□□□□ -0.1
MSX2P35548 FAM86C2P-203ENST00000528684 1004 ntBASIC14.45□□□□□ -0.1
MSX2P35548 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.45□□□□□ -0.1
MSX2P35548 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.45□□□□□ -0.1
MSX2P35548 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.45□□□□□ -0.1
MSX2P35548 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.45□□□□□ -0.1
MSX2P35548 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX2P35548 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX2P35548 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
MSX2P35548 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
MSX2P35548 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 FAM58CP-201ENST00000435741 640 ntBASIC14.44□□□□□ -0.1
MSX2P35548 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 RN7SL589P-201ENST00000481268 310 ntBASIC14.44□□□□□ -0.1
MSX2P35548 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.44□□□□□ -0.1
MSX2P35548 AC026120.1-201ENST00000611536 926 ntBASIC14.44□□□□□ -0.1
MSX2P35548 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.44□□□□□ -0.1
MSX2P35548 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX2P35548 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX2P35548 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX2P35548 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.43□□□□□ -0.1
MSX2P35548 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 HLA-A-201ENST00000376802 1334 ntBASIC14.43□□□□□ -0.1
MSX2P35548 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
MSX2P35548 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 AC004870.1-201ENST00000315132 882 ntBASIC14.43□□□□□ -0.1
MSX2P35548 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.43□□□□□ -0.1
MSX2P35548 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.43□□□□□ -0.1
MSX2P35548 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
MSX2P35548 MIR497HG-202ENST00000572453 3838 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms