Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.8□□□□□ -0.04
SHMT2P34897 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 KRT17P8-201ENST00000540749 863 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 RAB43P1-201ENST00000561790 589 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 LRRC59-203ENST00000576448 1531 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
SHMT2P34897 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 REXO1L4P-201ENST00000605109 1937 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SHMT2P34897 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.79□□□□□ -0.04
SHMT2P34897 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SHMT2P34897 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.79□□□□□ -0.04
SHMT2P34897 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
SHMT2P34897 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.79□□□□□ -0.04
SHMT2P34897 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.79□□□□□ -0.04
SHMT2P34897 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.79□□□□□ -0.04
SHMT2P34897 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
SHMT2P34897 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.79□□□□□ -0.04
SHMT2P34897 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.79□□□□□ -0.04
SHMT2P34897 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 AL603764.1-201ENST00000636452 321 ntBASIC14.79□□□□□ -0.04
SHMT2P34897 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.79□□□□□ -0.04
SHMT2P34897 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.79□□□□□ -0.04
SHMT2P34897 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHMT2P34897 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 MROH4P-201ENST00000431302 1578 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SHMT2P34897 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.78□□□□□ -0.04
SHMT2P34897 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.78□□□□□ -0.04
SHMT2P34897 WASH3P-207ENST00000560956 1394 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 AL360270.3-201ENST00000609118 1348 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 C2orf27AP3-201ENST00000434123 579 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 AC106760.1-201ENST00000508690 800 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.78□□□□□ -0.04
SHMT2P34897 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.78□□□□□ -0.04
SHMT2P34897 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.78□□□□□ -0.04
SHMT2P34897 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
SHMT2P34897 AL354718.3-201ENST00000616414 581 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 CR382287.1-201ENST00000623954 586 ntBASIC14.78□□□□□ -0.04
SHMT2P34897 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms