Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.05■□□□□ 0
MSH3P20585 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.05■□□□□ 0
MSH3P20585 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 FGD5P1-202ENST00000614866 2498 ntBASIC15.05■□□□□ 0
MSH3P20585 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.05■□□□□ -0
MSH3P20585 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.05■□□□□ -0
MSH3P20585 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
MSH3P20585 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.05■□□□□ -0
MSH3P20585 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.05■□□□□ -0
MSH3P20585 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.05■□□□□ -0
MSH3P20585 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.05■□□□□ -0
MSH3P20585 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.05■□□□□ -0
MSH3P20585 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.05■□□□□ -0
MSH3P20585 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
MSH3P20585 AC233724.13-201ENST00000598383 410 ntBASIC15.05■□□□□ -0
MSH3P20585 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.05■□□□□ -0
MSH3P20585 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.05■□□□□ -0
MSH3P20585 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
MSH3P20585 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.05■□□□□ -0
MSH3P20585 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
MSH3P20585 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.05■□□□□ -0
MSH3P20585 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.05■□□□□ -0
MSH3P20585 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
MSH3P20585 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.05■□□□□ -0
MSH3P20585 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
MSH3P20585 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
MSH3P20585 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.04■□□□□ -0
MSH3P20585 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 AL390755.1-201ENST00000623716 2027 ntBASIC15.04■□□□□ -0
MSH3P20585 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.04■□□□□ -0
MSH3P20585 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.04■□□□□ -0
MSH3P20585 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.04■□□□□ -0
MSH3P20585 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
MSH3P20585 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.04■□□□□ -0
MSH3P20585 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.04■□□□□ -0
MSH3P20585 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.04■□□□□ -0
MSH3P20585 USP32P1-208ENST00000506594 1164 ntBASIC15.04■□□□□ -0
MSH3P20585 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.04■□□□□ -0
MSH3P20585 AP001889.1-201ENST00000525414 633 ntBASIC15.04■□□□□ -0
MSH3P20585 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.04■□□□□ -0
MSH3P20585 BTNL10-201ENST00000595971 695 ntBASIC15.04■□□□□ -0
MSH3P20585 AL022328.1-201ENST00000610050 478 ntBASIC15.04■□□□□ -0
MSH3P20585 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
MSH3P20585 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.04■□□□□ -0
MSH3P20585 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MSH3P20585 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 LINC00528-201ENST00000600723 2160 ntBASIC15.04■□□□□ -0
MSH3P20585 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.04■□□□□ -0
MSH3P20585 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.04■□□□□ -0
MSH3P20585 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.04■□□□□ -0
MSH3P20585 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
MSH3P20585 AC106881.1-201ENST00000605849 3329 ntBASIC15.04■□□□□ -0
MSH3P20585 AL137783.1-201ENST00000623494 1896 ntBASIC15.03■□□□□ -0
MSH3P20585 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
MSH3P20585 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.03■□□□□ -0
MSH3P20585 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
MSH3P20585 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.03■□□□□ -0
MSH3P20585 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms