Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 CLCN4-203ENST00000421085 6534 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.2□□□□□ -0.46
HMGB3O15347 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 OTOF-204ENST00000402415 5108 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 AKR1C7P-201ENST00000305623 895 ntBASIC12.2□□□□□ -0.46
HMGB3O15347 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC12.2□□□□□ -0.46
HMGB3O15347 INIP-202ENST00000374236 874 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.2□□□□□ -0.46
HMGB3O15347 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 KRT18P21-201ENST00000515767 1272 ntBASIC12.2□□□□□ -0.46
HMGB3O15347 AF238378.1-201ENST00000526806 358 ntBASIC12.2□□□□□ -0.46
HMGB3O15347 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.2□□□□□ -0.46
HMGB3O15347 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 PLEKHM1-201ENST00000430334 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.2□□□□□ -0.46
HMGB3O15347 AC152010.1-201ENST00000415779 2006 ntBASIC12.2□□□□□ -0.46
HMGB3O15347 ARHGEF11-201ENST00000361409 5788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
HMGB3O15347 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HMGB3O15347 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HMGB3O15347 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
HMGB3O15347 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
HMGB3O15347 AC004987.2-201ENST00000395959 1148 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 PHKG1P2-201ENST00000457537 863 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC12.19□□□□□ -0.46
HMGB3O15347 AC073648.2-201ENST00000510116 352 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.19□□□□□ -0.46
HMGB3O15347 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 AC012640.2-201ENST00000561606 901 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 AC091304.2-201ENST00000564639 760 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.19□□□□□ -0.46
HMGB3O15347 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HMGB3O15347 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
HMGB3O15347 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 OTOG-201ENST00000342528 4992 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.19□□□□□ -0.46
HMGB3O15347 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
HMGB3O15347 AC099521.3-201ENST00000624251 2938 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 PCDHA4-204ENST00000618834 10557 ntBASIC12.19□□□□□ -0.46
HMGB3O15347 WDR62-203ENST00000401500 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HMGB3O15347 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HMGB3O15347 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.18□□□□□ -0.46
HMGB3O15347 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HMGB3O15347 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms