Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 RN7SL181P-201ENST00000462921 277 ntBASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 IGLV3-15-201ENST00000518356 244 ntBASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 NPM1P43-201ENST00000558669 786 ntBASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 RN7SL736P-201ENST00000613111 269 ntBASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 TCAF2P1-201ENST00000291129 2421 ntBASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PCDHGA1Q9Y5H4 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AC127383.1-201ENST00000444697 1800 ntBASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 FGFR3P1-201ENST00000449999 601 ntBASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AC138696.2-201ENST00000607376 223 ntBASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AC007950.2-201ENST00000615045 2347 ntBASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
PCDHGA1Q9Y5H4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms