Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
KIAA1549Q9HCM3 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AL160314.3-201ENST00000556041 767 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RN7SL574P-201ENST00000581512 297 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC244157.2-201ENST00000616239 1006 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC004899.1-201ENST00000424687 1714 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AKR7A2P1-201ENST00000460134 915 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 RHOQP1-201ENST00000555758 579 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC007663.3-201ENST00000609632 465 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC068587.10-201ENST00000641210 219 ntBASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
KIAA1549Q9HCM3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 SHC1P1-201ENST00000425230 1745 ntBASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 AC138028.6-201ENST00000616106 1482 ntBASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 AP001267.2-201ENST00000532619 2086 ntBASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 AC016700.1-201ENST00000429424 312 ntBASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 ADM-202ENST00000524948 584 ntTSL 2 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.28□□□□□ -0.28
KIAA1549Q9HCM3 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms