Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CHMP4AQ9BY43 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 AC011840.2-201ENST00000563063 1520 ntBASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 RBM38-204ENST00000371219 760 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 AC131206.1-201ENST00000538078 1211 ntBASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 MIR6869-201ENST00000619434 62 ntBASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 AC008741.2-201ENST00000612792 3115 ntBASIC19.16■□□□□ 0.66
CHMP4AQ9BY43 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AL591846.1-201ENST00000451736 433 ntBASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 RPSAP36-202ENST00000494591 1261 ntBASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 AL023803.2-201ENST00000620080 638 ntBASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4AQ9BY43 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4AQ9BY43 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4AQ9BY43 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4AQ9BY43 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4AQ9BY43 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4AQ9BY43 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4AQ9BY43 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 AC073347.1-201ENST00000421633 2643 ntBASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 MIR326-201ENST00000362220 95 ntBASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 MIR663B-201ENST00000408361 115 ntBASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 AC010141.1-201ENST00000411585 623 ntBASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 HSPB1P2-201ENST00000448722 546 ntBASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 GCOM2-201ENST00000509133 1104 ntBASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP4AQ9BY43 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms