Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 AC009090.5-201ENST00000624886 2285 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 AC007969.1-201ENST00000433675 447 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 MIR3615-201ENST00000581999 87 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 RN7SL713P-201ENST00000582127 302 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 AL118558.3-201ENST00000607414 1079 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 LINC02228-204ENST00000642115 2962 ntBASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAIPQ9BWF2 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AL360270.3-201ENST00000609118 1348 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 MIR663B-201ENST00000408361 115 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AC079178.1-201ENST00000420915 656 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 HSPB1P2-201ENST00000448722 546 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AC099548.2-209ENST00000480264 625 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 COX5BP1-201ENST00000507622 393 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AP001258.2-201ENST00000529891 490 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AP006547.1-201ENST00000563435 692 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AC243960.2-201ENST00000600996 747 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 ZACNP1-201ENST00000612259 710 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 AL023775.1-201ENST00000454907 1746 ntBASIC16.52■□□□□ 0.24
TRAIPQ9BWF2 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 FAM45BP-202ENST00000592932 1624 ntBASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAIPQ9BWF2 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRAIPQ9BWF2 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms