Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 AC126335.2-201ENST00000623362 4637 ntBASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
TRIM56Q9BRZ2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 AC241585.1-201ENST00000433527 519 ntBASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 AC018442.1-201ENST00000421439 2061 ntBASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM56Q9BRZ2 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM56Q9BRZ2 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM56Q9BRZ2 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms