Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 IGHEP2-201ENST00000519308 1256 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 TMBIM7P-202ENST00000641474 1516 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC069224.1-201ENST00000566372 1715 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC090820.1-201ENST00000519722 591 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 RN7SL665P-201ENST00000578793 300 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC008825.2-201ENST00000603374 718 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC110057.1-201ENST00000636031 898 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 PYY2-201ENST00000315776 282 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 RNLS-203ENST00000437752 525 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC006529.1-201ENST00000459978 637 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 RPS18P9-201ENST00000482817 460 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC013553.1-201ENST00000560906 267 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC020904.3-201ENST00000624199 442 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 NHP2P1-201ENST00000335274 462 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 F11R-204ENST00000537746 1245 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 HCG18-241ENST00000602290 821 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 AL596087.1-201ENST00000400979 1969 ntBASIC14.48□□□□□ -0.09
VPS13AQ96RL7 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS13AQ96RL7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS13AQ96RL7 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms