Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AL035633.1-201ENST00000406139 838 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AL512384.1-201ENST00000406683 331 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 TMEM14DP-201ENST00000422205 345 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AP001889.1-201ENST00000525414 633 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AC132938.2-201ENST00000579188 680 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AC004466.1-201ENST00000599515 1080 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AC145423.3-201ENST00000615987 467 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AL358472.5-202ENST00000641448 1267 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AL591163.1-201ENST00000641757 987 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CU639417.3-201ENST00000624240 1404 ntBASIC11.67□□□□□ -0.54
CCDC140Q96MF4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CCDC140Q96MF4 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 INTS4P1-203ENST00000641008 3683 ntBASIC11.66□□□□□ -0.54
CCDC140Q96MF4 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 AL161772.1-201ENST00000610494 4412 ntBASIC11.66□□□□□ -0.54
CCDC140Q96MF4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 AL138709.1-201ENST00000614840 1693 ntBASIC11.66□□□□□ -0.54
CCDC140Q96MF4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 COX5BP8-201ENST00000416911 349 ntBASIC11.66□□□□□ -0.54
CCDC140Q96MF4 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
CCDC140Q96MF4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms