Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AC018442.1-201ENST00000421439 2061 ntBASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 CICP20-201ENST00000443330 2801 ntBASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 AC044860.1-202ENST00000559481 777 ntBASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 AL596442.2-201ENST00000610240 980 ntBASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 AC106881.1-201ENST00000605849 3329 ntBASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 STRCP1-201ENST00000509801 5328 ntBASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC54Q8NEL0 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 FAM86GP-201ENST00000448322 971 ntBASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 DNAJB3-202ENST00000449667 1266 ntBASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 RPL13AP25-201ENST00000484130 612 ntBASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms