Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 AL138709.1-201ENST00000614840 1693 ntBASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 GOLGA2P4-201ENST00000441462 777 ntBASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 MROH4P-201ENST00000431302 1578 ntBASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
CCDC144BQ3MJ40 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 AC006033.1-201ENST00000440505 426 ntBASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 AC132938.4-201ENST00000623835 848 ntBASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC144BQ3MJ40 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms