Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIM2P55344 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
LIM2P55344 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.32□□□□□ -0.12
LIM2P55344 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.32□□□□□ -0.12
LIM2P55344 AC005034.1-201ENST00000426657 489 ntBASIC14.32□□□□□ -0.12
LIM2P55344 BCRP2-202ENST00000447763 634 ntBASIC14.32□□□□□ -0.12
LIM2P55344 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 BCRP6-201ENST00000510112 632 ntBASIC14.32□□□□□ -0.12
LIM2P55344 BCRP7-201ENST00000511549 544 ntBASIC14.32□□□□□ -0.12
LIM2P55344 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 BTNL10-201ENST00000595971 695 ntBASIC14.32□□□□□ -0.12
LIM2P55344 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
LIM2P55344 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIM2P55344 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
LIM2P55344 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.31□□□□□ -0.12
LIM2P55344 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.31□□□□□ -0.12
LIM2P55344 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.31□□□□□ -0.12
LIM2P55344 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.31□□□□□ -0.12
LIM2P55344 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.31□□□□□ -0.12
LIM2P55344 AC026434.2-201ENST00000506094 1078 ntBASIC14.31□□□□□ -0.12
LIM2P55344 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.31□□□□□ -0.12
LIM2P55344 AL022328.1-201ENST00000610050 478 ntBASIC14.31□□□□□ -0.12
LIM2P55344 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms