Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.85□□□□□ -0.03
LIMK1P53667 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
LIMK1P53667 AL157792.1-201ENST00000488281 530 ntBASIC14.85□□□□□ -0.03
LIMK1P53667 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.85□□□□□ -0.03
LIMK1P53667 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.85□□□□□ -0.03
LIMK1P53667 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.85□□□□□ -0.03
LIMK1P53667 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 AC090164.2-201ENST00000611487 516 ntBASIC14.85□□□□□ -0.03
LIMK1P53667 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 NAP1L6-202ENST00000641404 1222 ntBASIC14.85□□□□□ -0.03
LIMK1P53667 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
LIMK1P53667 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIMK1P53667 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 BUD31-205ENST00000456893 512 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.84□□□□□ -0.03
LIMK1P53667 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
LIMK1P53667 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.84□□□□□ -0.03
LIMK1P53667 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 AC141586.1-203ENST00000567242 366 ntBASIC14.84□□□□□ -0.03
LIMK1P53667 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.84□□□□□ -0.03
LIMK1P53667 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.84□□□□□ -0.03
LIMK1P53667 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LIMK1P53667 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 AL162426.1-201ENST00000624141 743 ntBASIC14.84□□□□□ -0.03
LIMK1P53667 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 AL109954.1-202ENST00000564051 2148 ntBASIC14.84□□□□□ -0.03
LIMK1P53667 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LIMK1P53667 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.84□□□□□ -0.03
LIMK1P53667 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIMK1P53667 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LIMK1P53667 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
LIMK1P53667 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIMK1P53667 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.83□□□□□ -0.03
LIMK1P53667 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.83□□□□□ -0.03
LIMK1P53667 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.83□□□□□ -0.03
LIMK1P53667 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.83□□□□□ -0.03
LIMK1P53667 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.83□□□□□ -0.04
LIMK1P53667 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.83□□□□□ -0.04
LIMK1P53667 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.83□□□□□ -0.04
LIMK1P53667 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIMK1P53667 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms