Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 AC243562.2-201ENST00000561247 970 ntBASIC17.71■□□□□ 0.43
MRE11P49959 AC051619.7-201ENST00000568314 623 ntBASIC17.71■□□□□ 0.43
MRE11P49959 MIR3909-201ENST00000579518 119 ntBASIC17.71■□□□□ 0.43
MRE11P49959 GGTLC5P-201ENST00000617623 998 ntBASIC17.71■□□□□ 0.43
MRE11P49959 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC17.71■□□□□ 0.43
MRE11P49959 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.71■□□□□ 0.43
MRE11P49959 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.71■□□□□ 0.43
MRE11P49959 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC17.71■□□□□ 0.43
MRE11P49959 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
MRE11P49959 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.71■□□□□ 0.43
MRE11P49959 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.71■□□□□ 0.43
MRE11P49959 AC055811.4-201ENST00000624039 1754 ntBASIC17.71■□□□□ 0.43
MRE11P49959 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MRE11P49959 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
MRE11P49959 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MRE11P49959 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MRE11P49959 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
MRE11P49959 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
MRE11P49959 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MRE11P49959 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
MRE11P49959 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.7■□□□□ 0.42
MRE11P49959 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.7■□□□□ 0.42
MRE11P49959 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.7■□□□□ 0.42
MRE11P49959 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.7■□□□□ 0.42
MRE11P49959 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.7■□□□□ 0.42
MRE11P49959 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.7■□□□□ 0.42
MRE11P49959 SLC25A39P2-201ENST00000537614 270 ntBASIC17.7■□□□□ 0.42
MRE11P49959 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.7■□□□□ 0.42
MRE11P49959 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.7■□□□□ 0.42
MRE11P49959 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 AC009093.7-201ENST00000623853 1223 ntBASIC17.7■□□□□ 0.42
MRE11P49959 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.7■□□□□ 0.42
MRE11P49959 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MRE11P49959 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MRE11P49959 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 AC083964.2-201ENST00000623988 2396 ntBASIC17.69■□□□□ 0.42
MRE11P49959 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.69■□□□□ 0.42
MRE11P49959 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
MRE11P49959 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.69■□□□□ 0.42
MRE11P49959 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 TMEM198B-204ENST00000484016 896 ntBASIC17.69■□□□□ 0.42
MRE11P49959 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 AC092658.1-201ENST00000505836 891 ntBASIC17.69■□□□□ 0.42
MRE11P49959 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 AC017083.2-201ENST00000608069 979 ntBASIC17.69■□□□□ 0.42
MRE11P49959 AC004706.3-202ENST00000621574 984 ntBASIC17.69■□□□□ 0.42
MRE11P49959 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
MRE11P49959 AL805961.1-202ENST00000641562 540 ntBASIC17.69■□□□□ 0.42
MRE11P49959 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
MRE11P49959 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms