Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.47□□□□□ -0.09
MSX2P35548 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
MSX2P35548 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 SPDYE11-202ENST00000450699 704 ntBASIC14.47□□□□□ -0.09
MSX2P35548 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
MSX2P35548 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.47□□□□□ -0.09
MSX2P35548 SPDYE9P-201ENST00000570642 692 ntBASIC14.47□□□□□ -0.09
MSX2P35548 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 SPDYE10P-202ENST00000612005 668 ntBASIC14.47□□□□□ -0.09
MSX2P35548 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 SPDYE8P-202ENST00000612377 668 ntBASIC14.47□□□□□ -0.09
MSX2P35548 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 AL157414.3-201ENST00000624276 1954 ntBASIC14.47□□□□□ -0.09
MSX2P35548 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
MSX2P35548 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX2P35548 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
MSX2P35548 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX2P35548 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
MSX2P35548 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 AC104457.1-201ENST00000401024 814 ntBASIC14.46□□□□□ -0.09
MSX2P35548 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX2P35548 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX2P35548 ADH5P3-201ENST00000433842 1137 ntBASIC14.46□□□□□ -0.09
MSX2P35548 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX2P35548 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX2P35548 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX2P35548 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX2P35548 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.46□□□□□ -0.09
MSX2P35548 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
MSX2P35548 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 AC145285.3-201ENST00000564603 959 ntBASIC14.46□□□□□ -0.09
MSX2P35548 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 AC105021.1-202ENST00000570572 669 ntBASIC14.46□□□□□ -0.09
MSX2P35548 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.46□□□□□ -0.09
MSX2P35548 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
MSX2P35548 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.46□□□□□ -0.1
MSX2P35548 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
MSX2P35548 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.46□□□□□ -0.1
MSX2P35548 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MSX2P35548 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX2P35548 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX2P35548 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
MSX2P35548 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX2P35548 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX2P35548 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms