Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 HLA-J-204ENST00000495278 958 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 SNORD3B-2-202ENST00000571722 791 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 MIR6720-201ENST00000611664 98 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.58□□□□□ -0.08
HOXC4P09017 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HOXC4P09017 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 C8orf49-201ENST00000525043 1968 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 AC073347.1-201ENST00000421633 2643 ntBASIC14.58□□□□□ -0.08
HOXC4P09017 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
HOXC4P09017 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
HOXC4P09017 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HOXC4P09017 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXC4P09017 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXC4P09017 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.58□□□□□ -0.08
HOXC4P09017 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 AC092135.3-201ENST00000624151 1846 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.57□□□□□ -0.08
HOXC4P09017 KLF2P1-201ENST00000447438 1042 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.57□□□□□ -0.08
HOXC4P09017 AC022217.1-201ENST00000521069 738 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.57□□□□□ -0.08
HOXC4P09017 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.57□□□□□ -0.08
HOXC4P09017 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.57□□□□□ -0.08
HOXC4P09017 AL132994.2-201ENST00000603120 687 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 AL645939.5-201ENST00000606834 243 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 AC090164.2-201ENST00000611487 516 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 AC126177.1-201ENST00000547829 2218 ntBASIC14.57□□□□□ -0.08
HOXC4P09017 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXC4P09017 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXC4P09017 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
HOXC4P09017 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 AC092384.3-202ENST00000564646 2873 ntBASIC14.56□□□□□ -0.08
HOXC4P09017 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
HOXC4P09017 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXC4P09017 AL590440.2-201ENST00000641973 1595 ntBASIC14.56□□□□□ -0.08
HOXC4P09017 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
HOXC4P09017 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HOXC4P09017 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXC4P09017 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HOXC4P09017 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXC4P09017 AC011742.3-201ENST00000439053 820 ntBASIC14.56□□□□□ -0.08
HOXC4P09017 VDAC1P1-201ENST00000439229 848 ntBASIC14.56□□□□□ -0.08
HOXC4P09017 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXC4P09017 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXC4P09017 HIST2H2BC-201ENST00000498492 580 ntBASIC14.56□□□□□ -0.08
HOXC4P09017 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms