Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SLC28A1O00337 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
SLC28A1O00337 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.56□□□□□ -0.08
SLC28A1O00337 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SLC28A1O00337 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SLC28A1O00337 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.56□□□□□ -0.08
SLC28A1O00337 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 MEP1AP4-201ENST00000423244 1087 ntBASIC14.56□□□□□ -0.08
SLC28A1O00337 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.56□□□□□ -0.08
SLC28A1O00337 METTL21AP1-201ENST00000438852 635 ntBASIC14.56□□□□□ -0.08
SLC28A1O00337 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.56□□□□□ -0.08
SLC28A1O00337 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 VDAC1P7-201ENST00000462417 847 ntBASIC14.56□□□□□ -0.08
SLC28A1O00337 TPRX2P-201ENST00000535362 881 ntBASIC14.56□□□□□ -0.08
SLC28A1O00337 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.56□□□□□ -0.08
SLC28A1O00337 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.56□□□□□ -0.08
SLC28A1O00337 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.56□□□□□ -0.08
SLC28A1O00337 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 AL662799.1-202ENST00000614205 422 ntBASIC14.56□□□□□ -0.08
SLC28A1O00337 BX539320.1-201ENST00000623759 877 ntBASIC14.56□□□□□ -0.08
SLC28A1O00337 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.56□□□□□ -0.08
SLC28A1O00337 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.56□□□□□ -0.08
SLC28A1O00337 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SLC28A1O00337 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SLC28A1O00337 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.55□□□□□ -0.08
SLC28A1O00337 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.55□□□□□ -0.08
SLC28A1O00337 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SLC28A1O00337 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.55□□□□□ -0.08
SLC28A1O00337 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.55□□□□□ -0.08
SLC28A1O00337 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 DOC2GP-202ENST00000514950 1163 ntBASIC14.55□□□□□ -0.08
SLC28A1O00337 AC022447.6-201ENST00000515522 438 ntBASIC14.55□□□□□ -0.08
SLC28A1O00337 AC104794.3-201ENST00000566840 1248 ntBASIC14.55□□□□□ -0.08
SLC28A1O00337 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.55□□□□□ -0.08
SLC28A1O00337 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
SLC28A1O00337 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 PRSS30P-206ENST00000641773 873 ntBASIC14.55□□□□□ -0.08
SLC28A1O00337 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SLC28A1O00337 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.55□□□□□ -0.08
SLC28A1O00337 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SLC28A1O00337 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SLC28A1O00337 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SLC28A1O00337 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms