Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 ZNF890P-202ENST00000530367 1156 ntBASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 DUX4L27-201ENST00000554796 1261 ntBASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AC044860.1-202ENST00000559481 777 ntBASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AC015910.1-201ENST00000579400 975 ntBASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AL844908.2-201ENST00000609461 460 ntBASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC39Q9UFE4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 AC113367.3-201ENST00000508316 1912 ntBASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 TOMM22P5-201ENST00000416399 439 ntBASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 ACE3P-201ENST00000423435 1973 ntBASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC39Q9UFE4 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms