Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AJ011932.1-201ENST00000621707 465 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC139749.1-202ENST00000617529 3139 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 KRT8P14-201ENST00000414254 1442 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC087499.6-201ENST00000411576 835 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC114812.1-204ENST00000449669 728 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SERBP1P5-201ENST00000510079 1181 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AP001582.1-201ENST00000525856 295 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC124283.3-201ENST00000570869 594 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 AC007541.1-201ENST00000570282 1469 ntBASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS29Q9UBQ0 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TSPY16P-201ENST00000449843 468 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms