Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 KRT43P-201ENST00000434019 910 ntBASIC13.69□□□□□ -0.22
USB1Q9BQ65 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC009486.1-201ENST00000569860 813 ntBASIC13.69□□□□□ -0.22
USB1Q9BQ65 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 ZNF714-203ENST00000596053 800 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC024933.1-201ENST00000608472 348 ntBASIC13.69□□□□□ -0.22
USB1Q9BQ65 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 INTS4P2-202ENST00000614726 2019 ntBASIC13.68□□□□□ -0.22
USB1Q9BQ65 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 ACTG1P3-201ENST00000431775 1114 ntBASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC009652.1-201ENST00000528326 648 ntTSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC015910.1-201ENST00000579400 975 ntBASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 COL6A4P2-202ENST00000504443 2753 ntBASIC13.68□□□□□ -0.22
USB1Q9BQ65 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AL121723.1-201ENST00000445194 1519 ntBASIC13.68□□□□□ -0.22
USB1Q9BQ65 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.68□□□□□ -0.22
USB1Q9BQ65 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms