Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AC004066.1-201ENST00000502488 802 ntBASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AP001889.1-201ENST00000525414 633 ntBASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AC068587.3-201ENST00000526613 355 ntBASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AC233724.13-201ENST00000598383 410 ntBASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 CTBP2P5-201ENST00000454986 1264 ntBASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 PTP4A1P2-201ENST00000546033 454 ntBASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP4CQ96CF2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AC007292.2-201ENST00000593524 1812 ntBASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 FTH1P14-201ENST00000482930 551 ntBASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AC015936.2-201ENST00000593177 259 ntBASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AL138799.1-201ENST00000448213 1675 ntBASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms