Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC19.44■□□□□ 0.7
USP54Q70EL1 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
USP54Q70EL1 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 MIR5196-201ENST00000578146 115 ntBASIC19.44■□□□□ 0.7
USP54Q70EL1 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC19.44■□□□□ 0.7
USP54Q70EL1 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USP54Q70EL1 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
USP54Q70EL1 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC19.44■□□□□ 0.7
USP54Q70EL1 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.44■□□□□ 0.7
USP54Q70EL1 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.44■□□□□ 0.7
USP54Q70EL1 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP54Q70EL1 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC19.43■□□□□ 0.7
USP54Q70EL1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC091951.1-201ENST00000512854 2465 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 RN7SKP109-201ENST00000410592 316 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC19.43■□□□□ 0.7
USP54Q70EL1 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC012362.1-201ENST00000434906 739 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AL354861.1-201ENST00000445213 355 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.43■□□□□ 0.7
USP54Q70EL1 IGHV1-12-201ENST00000518307 205 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
USP54Q70EL1 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.43■□□□□ 0.7
USP54Q70EL1 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
USP54Q70EL1 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AGGF1P1-201ENST00000509500 2073 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.43■□□□□ 0.7
USP54Q70EL1 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
USP54Q70EL1 RGS5-216ENST00000449680 788 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC19.43■□□□□ 0.7
USP54Q70EL1 KLF17P1-201ENST00000547105 1126 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC19.43■□□□□ 0.7
USP54Q70EL1 AL132780.4-201ENST00000624870 1135 ntBASIC19.43■□□□□ 0.7
USP54Q70EL1 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19.43■□□□□ 0.7
USP54Q70EL1 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP54Q70EL1 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USP54Q70EL1 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC19.42■□□□□ 0.7
USP54Q70EL1 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP54Q70EL1 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC19.42■□□□□ 0.7
USP54Q70EL1 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms