Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 FAM58BP-201ENST00000439056 645 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA4P78363 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA4P78363 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC12.99□□□□□ -0.33
ABCA4P78363 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.99□□□□□ -0.33
ABCA4P78363 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 COX6A1P2-201ENST00000620597 330 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA4P78363 AK6-201ENST00000380818 1183 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA4P78363 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA4P78363 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 AC009955.4-201ENST00000597192 544 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 AC004466.1-201ENST00000599515 1080 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.99□□□□□ -0.33
ABCA4P78363 PCBP2-OT1-201ENST00000634357 590 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 AL805961.1-203ENST00000641078 1258 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 AL391005.1-201ENST00000623953 2435 ntBASIC12.98□□□□□ -0.33
ABCA4P78363 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 AC008132.1-202ENST00000342005 1389 ntBASIC12.98□□□□□ -0.33
ABCA4P78363 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
ABCA4P78363 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.98□□□□□ -0.33
ABCA4P78363 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA4P78363 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC12.98□□□□□ -0.33
ABCA4P78363 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC12.98□□□□□ -0.33
ABCA4P78363 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.98□□□□□ -0.33
ABCA4P78363 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 AC132192.2-201ENST00000596206 1147 ntBASIC12.98□□□□□ -0.33
ABCA4P78363 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC12.98□□□□□ -0.33
ABCA4P78363 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
ABCA4P78363 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA4P78363 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA4P78363 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA4P78363 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA4P78363 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 RN7SKP175-201ENST00000408472 289 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 AC125604.1-201ENST00000496255 707 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC12.97□□□□□ -0.33
ABCA4P78363 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 AL161670.2-201ENST00000557650 1227 ntBASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms