Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 INTS4P1-203ENST00000641008 3683 ntBASIC13.55□□□□□ -0.24
CLRN1P58418 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
CLRN1P58418 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 AC236430.1-201ENST00000402231 743 ntBASIC13.55□□□□□ -0.24
CLRN1P58418 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.55□□□□□ -0.24
CLRN1P58418 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.55□□□□□ -0.24
CLRN1P58418 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.55□□□□□ -0.24
CLRN1P58418 AC092552.1-201ENST00000547243 906 ntBASIC13.55□□□□□ -0.24
CLRN1P58418 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.55□□□□□ -0.24
CLRN1P58418 AC133539.2-201ENST00000604757 467 ntBASIC13.55□□□□□ -0.24
CLRN1P58418 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 REXO1L5P-201ENST00000622260 2098 ntBASIC13.55□□□□□ -0.24
CLRN1P58418 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CLRN1P58418 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.55□□□□□ -0.24
CLRN1P58418 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.55□□□□□ -0.24
CLRN1P58418 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CLRN1P58418 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CLRN1P58418 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 AC002472.2-201ENST00000442739 958 ntBASIC13.54□□□□□ -0.24
CLRN1P58418 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.54□□□□□ -0.24
CLRN1P58418 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 MIR4745-201ENST00000577608 62 ntBASIC13.54□□□□□ -0.24
CLRN1P58418 RN7SL204P-201ENST00000582831 262 ntBASIC13.54□□□□□ -0.24
CLRN1P58418 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.54□□□□□ -0.24
CLRN1P58418 AL355385.1-201ENST00000606123 409 ntBASIC13.54□□□□□ -0.24
CLRN1P58418 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.54□□□□□ -0.24
CLRN1P58418 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.54□□□□□ -0.24
CLRN1P58418 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.54□□□□□ -0.24
CLRN1P58418 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
CLRN1P58418 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLRN1P58418 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms