Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 ACTBP8-201ENST00000403258 1108 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.81■□□□□ 0.12
HDAC4P56524 RN7SL837P-201ENST00000463010 287 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.81■□□□□ 0.12
HDAC4P56524 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 AL596325.1-201ENST00000563991 1082 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 MIR5189-201ENST00000577370 114 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 AC010319.3-201ENST00000597028 470 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 SBF1P1-201ENST00000444527 5631 ntBASIC15.81■□□□□ 0.12
HDAC4P56524 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDAC4P56524 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HDAC4P56524 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.8■□□□□ 0.12
HDAC4P56524 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
HDAC4P56524 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.8■□□□□ 0.12
HDAC4P56524 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDAC4P56524 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.8■□□□□ 0.12
HDAC4P56524 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HDAC4P56524 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
HDAC4P56524 ACTG1P3-201ENST00000431775 1114 ntBASIC15.8■□□□□ 0.12
HDAC4P56524 RN7SL752P-201ENST00000463779 287 ntBASIC15.8■□□□□ 0.12
HDAC4P56524 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.8■□□□□ 0.12
HDAC4P56524 AC022616.1-201ENST00000518688 554 ntBASIC15.8■□□□□ 0.12
HDAC4P56524 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
HDAC4P56524 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 AC009486.1-201ENST00000569860 813 ntBASIC15.8■□□□□ 0.12
HDAC4P56524 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.8■□□□□ 0.12
HDAC4P56524 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HDAC4P56524 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HDAC4P56524 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 AC018529.2-202ENST00000611482 3087 ntBASIC15.8■□□□□ 0.12
HDAC4P56524 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDAC4P56524 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC4P56524 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HDAC4P56524 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC4P56524 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC4P56524 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 AL161772.1-201ENST00000610494 4412 ntBASIC15.79■□□□□ 0.12
HDAC4P56524 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC4P56524 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC4P56524 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC4P56524 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms