Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
PTPN6P29350 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 AC004066.1-201ENST00000502488 802 ntBASIC14.36□□□□□ -0.11
PTPN6P29350 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.36□□□□□ -0.11
PTPN6P29350 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
PTPN6P29350 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PTPN6P29350 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.36□□□□□ -0.11
PTPN6P29350 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PTPN6P29350 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 CICP4-201ENST00000447359 2812 ntBASIC14.36□□□□□ -0.11
PTPN6P29350 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.36□□□□□ -0.11
PTPN6P29350 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTPN6P29350 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PTPN6P29350 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PTPN6P29350 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 AL354702.1-201ENST00000442006 1960 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.35□□□□□ -0.11
PTPN6P29350 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 AC087499.6-201ENST00000411576 835 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 TPT1P11-201ENST00000458482 498 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PTPN6P29350 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.35□□□□□ -0.11
PTPN6P29350 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.35□□□□□ -0.11
PTPN6P29350 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 TP53TG3HP-202ENST00000569755 579 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 AC140912.1-201ENST00000577171 1054 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 AC099568.2-201ENST00000609194 695 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
PTPN6P29350 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PTPN6P29350 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.35□□□□□ -0.11
PTPN6P29350 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.35□□□□□ -0.11
PTPN6P29350 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTPN6P29350 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms