Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGA1P17096 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGA1P17096 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
HMGA1P17096 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGA1P17096 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 AC136759.1-202ENST00000530858 2194 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGA1P17096 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 AL645933.1-201ENST00000440087 609 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGA1P17096 RN7SL11P-201ENST00000471305 293 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGA1P17096 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGA1P17096 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.48■□□□□ 0.07
HMGA1P17096 AC009779.1-201ENST00000551138 283 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGA1P17096 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGA1P17096 AC008805.1-201ENST00000590892 364 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 AC091544.8-201ENST00000619490 361 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 AC091812.3-201ENST00000621362 345 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGA1P17096 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGA1P17096 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
HMGA1P17096 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 LINC00554-201ENST00000564841 3011 ntBASIC15.48■□□□□ 0.07
HMGA1P17096 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
HMGA1P17096 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGA1P17096 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HMGA1P17096 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGA1P17096 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 AL035414.1-201ENST00000451327 857 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGA1P17096 UPF3AP2-201ENST00000457924 1132 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC024681.1-201ENST00000521917 487 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGA1P17096 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGA1P17096 RN7SL574P-201ENST00000581512 297 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.47■□□□□ 0.07
HMGA1P17096 AC009884.2-201ENST00000603110 324 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
HMGA1P17096 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGA1P17096 AGAP7P-201ENST00000582299 2062 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 AGAP14-201ENST00000624701 2060 ntBASIC15.47■□□□□ 0.07
HMGA1P17096 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGA1P17096 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms