Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 AP005117.1-202ENST00000581724 1908 ntBASIC13.78□□□□□ -0.2
HOXD4P09016 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HOXD4P09016 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 AC006001.1-201ENST00000325130 474 ntBASIC13.78□□□□□ -0.2
HOXD4P09016 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.78□□□□□ -0.2
HOXD4P09016 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HOXD4P09016 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
HOXD4P09016 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.78□□□□□ -0.2
HOXD4P09016 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 AC108725.1-201ENST00000495472 409 ntBASIC13.78□□□□□ -0.2
HOXD4P09016 AC004066.1-201ENST00000502488 802 ntBASIC13.78□□□□□ -0.2
HOXD4P09016 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.78□□□□□ -0.2
HOXD4P09016 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.78□□□□□ -0.2
HOXD4P09016 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 AC068587.10-201ENST00000641210 219 ntBASIC13.78□□□□□ -0.2
HOXD4P09016 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD4P09016 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.77□□□□□ -0.2
HOXD4P09016 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD4P09016 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD4P09016 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.2
HOXD4P09016 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.77□□□□□ -0.2
HOXD4P09016 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 ACTBP8-201ENST00000403258 1108 ntBASIC13.77□□□□□ -0.21
HOXD4P09016 RPL5P21-201ENST00000404620 815 ntBASIC13.77□□□□□ -0.21
HOXD4P09016 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD4P09016 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD4P09016 GNRHR2-203ENST00000581100 1187 ntBASIC13.77□□□□□ -0.21
HOXD4P09016 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXD4P09016 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms