Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SEMA3DO95025 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 SOCS2P1-201ENST00000417727 557 ntBASIC14.54□□□□□ -0.08
SEMA3DO95025 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.54□□□□□ -0.08
SEMA3DO95025 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.54□□□□□ -0.08
SEMA3DO95025 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.54□□□□□ -0.08
SEMA3DO95025 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.54□□□□□ -0.08
SEMA3DO95025 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.54□□□□□ -0.08
SEMA3DO95025 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.54□□□□□ -0.08
SEMA3DO95025 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 AC007541.1-201ENST00000570282 1469 ntBASIC14.54□□□□□ -0.08
SEMA3DO95025 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 AL390755.1-201ENST00000623716 2027 ntBASIC14.54□□□□□ -0.08
SEMA3DO95025 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SEMA3DO95025 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.54□□□□□ -0.08
SEMA3DO95025 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SEMA3DO95025 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 AC015656.1-201ENST00000624209 3578 ntBASIC14.53□□□□□ -0.08
SEMA3DO95025 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.53□□□□□ -0.08
SEMA3DO95025 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.53□□□□□ -0.08
SEMA3DO95025 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.53□□□□□ -0.08
SEMA3DO95025 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SEMA3DO95025 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.53□□□□□ -0.08
SEMA3DO95025 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.53□□□□□ -0.08
SEMA3DO95025 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SEMA3DO95025 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.53□□□□□ -0.08
SEMA3DO95025 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.53□□□□□ -0.08
SEMA3DO95025 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.53□□□□□ -0.08
SEMA3DO95025 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.53□□□□□ -0.08
SEMA3DO95025 RN7SL204P-201ENST00000582831 262 ntBASIC14.53□□□□□ -0.08
SEMA3DO95025 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.53□□□□□ -0.08
SEMA3DO95025 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SEMA3DO95025 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.53□□□□□ -0.08
SEMA3DO95025 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SEMA3DO95025 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.53□□□□□ -0.08
SEMA3DO95025 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms