Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC1Q9Y3B2 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 RP9P-202ENST00000450133 1212 ntBASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.53■□□□□ 0.88
EXOSC1Q9Y3B2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.52■□□□□ 0.88
EXOSC1Q9Y3B2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
EXOSC1Q9Y3B2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
EXOSC1Q9Y3B2 EP400NL-214ENST00000641289 2402 ntBASIC20.52■□□□□ 0.87
EXOSC1Q9Y3B2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
EXOSC1Q9Y3B2 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 MIR3648-2-201ENST00000581792 180 ntBASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 MIR3648-1-201ENST00000615959 180 ntBASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC1Q9Y3B2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
EXOSC1Q9Y3B2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 AC092296.2-201ENST00000589470 999 ntBASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 LINC00565-201ENST00000562710 2331 ntBASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
EXOSC1Q9Y3B2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 AC093536.1-201ENST00000569153 554 ntBASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
EXOSC1Q9Y3B2 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
EXOSC1Q9Y3B2 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 C1orf229-201ENST00000623686 2258 ntBASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.46■□□□□ 0.87
EXOSC1Q9Y3B2 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms