Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA2Q9Y261 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA2Q9Y261 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 AL592295.1-201ENST00000400984 884 ntBASIC18.54■□□□□ 0.56
FOXA2Q9Y261 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA2Q9Y261 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA2Q9Y261 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA2Q9Y261 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA2Q9Y261 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.52■□□□□ 0.56
FOXA2Q9Y261 AC022616.5-201ENST00000518796 181 ntBASIC18.52■□□□□ 0.56
FOXA2Q9Y261 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA2Q9Y261 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
FOXA2Q9Y261 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
FOXA2Q9Y261 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
FOXA2Q9Y261 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
FOXA2Q9Y261 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
FOXA2Q9Y261 AC090877.2-201ENST00000558441 1738 ntBASIC18.52■□□□□ 0.55
FOXA2Q9Y261 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA2Q9Y261 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 PVT1_1.1-201ENST00000615125 194 ntBASIC18.5■□□□□ 0.55
FOXA2Q9Y261 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA2Q9Y261 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 YBX1P4-201ENST00000392794 808 ntBASIC18.49■□□□□ 0.55
FOXA2Q9Y261 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA2Q9Y261 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms