Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13AQ96RL7 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VPS13AQ96RL7 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.09■■□□□ 1.29
VPS13AQ96RL7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.09■■□□□ 1.29
VPS13AQ96RL7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VPS13AQ96RL7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
VPS13AQ96RL7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
VPS13AQ96RL7 AC136469.2-201ENST00000623944 1028 ntBASIC23.09■■□□□ 1.29
VPS13AQ96RL7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VPS13AQ96RL7 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
VPS13AQ96RL7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.08■■□□□ 1.29
VPS13AQ96RL7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.08■■□□□ 1.29
VPS13AQ96RL7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.08■■□□□ 1.29
VPS13AQ96RL7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
VPS13AQ96RL7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.08■■□□□ 1.29
VPS13AQ96RL7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 AL358852.1-201ENST00000623174 1268 ntBASIC23.07■■□□□ 1.28
VPS13AQ96RL7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 AC099791.2-201ENST00000605725 427 ntBASIC23.07■■□□□ 1.28
VPS13AQ96RL7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
VPS13AQ96RL7 TERF1P2-201ENST00000583350 1212 ntBASIC23.07■■□□□ 1.28
VPS13AQ96RL7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS13AQ96RL7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS13AQ96RL7 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.05■■□□□ 1.28
VPS13AQ96RL7 AC104771.1-201ENST00000603335 964 ntBASIC23.05■■□□□ 1.28
VPS13AQ96RL7 AC090877.2-201ENST00000558441 1738 ntBASIC23.04■■□□□ 1.28
VPS13AQ96RL7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS13AQ96RL7 CDCA4P2-201ENST00000441182 718 ntBASIC23.03■■□□□ 1.28
VPS13AQ96RL7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS13AQ96RL7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS13AQ96RL7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
VPS13AQ96RL7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
VPS13AQ96RL7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
VPS13AQ96RL7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
VPS13AQ96RL7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.02■■□□□ 1.28
VPS13AQ96RL7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
VPS13AQ96RL7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.02■■□□□ 1.28
VPS13AQ96RL7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.02■■□□□ 1.28
VPS13AQ96RL7 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.02■■□□□ 1.28
VPS13AQ96RL7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 AC009102.2-201ENST00000606772 1639 ntBASIC23.01■■□□□ 1.27
VPS13AQ96RL7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 AP004609.3-201ENST00000610705 1884 ntBASIC23.01■■□□□ 1.27
VPS13AQ96RL7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
VPS13AQ96RL7 CCDC92B-201ENST00000575506 885 ntBASIC23.01■■□□□ 1.27
VPS13AQ96RL7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS13AQ96RL7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS13AQ96RL7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
VPS13AQ96RL7 MPST-208ENST00000628507 698 ntTSL 5 BASIC23■■□□□ 1.27
VPS13AQ96RL7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS13AQ96RL7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS13AQ96RL7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23■■□□□ 1.27
VPS13AQ96RL7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23■■□□□ 1.27
VPS13AQ96RL7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23■■□□□ 1.27
VPS13AQ96RL7 TSPY26P-201ENST00000476365 1326 ntBASIC23■■□□□ 1.27
VPS13AQ96RL7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23■■□□□ 1.27
VPS13AQ96RL7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
VPS13AQ96RL7 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.99■■□□□ 1.27
VPS13AQ96RL7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms