Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 RPS2P7-201ENST00000447334 885 ntBASIC22.79■■□□□ 1.24
PTCD3Q96EY7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 AC129492.7-201ENST00000622992 756 ntBASIC22.79■■□□□ 1.24
PTCD3Q96EY7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.79■■□□□ 1.24
PTCD3Q96EY7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
PTCD3Q96EY7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.78■■□□□ 1.24
PTCD3Q96EY7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
PTCD3Q96EY7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.78■■□□□ 1.24
PTCD3Q96EY7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PTCD3Q96EY7 NTF6A-201ENST00000591175 560 ntBASIC22.78■■□□□ 1.24
PTCD3Q96EY7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
PTCD3Q96EY7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.77■■□□□ 1.24
PTCD3Q96EY7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
PTCD3Q96EY7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
PTCD3Q96EY7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
PTCD3Q96EY7 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
PTCD3Q96EY7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.76■■□□□ 1.23
PTCD3Q96EY7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
PTCD3Q96EY7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
PTCD3Q96EY7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PTCD3Q96EY7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 EP400NL-214ENST00000641289 2402 ntBASIC22.75■■□□□ 1.23
PTCD3Q96EY7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCD3Q96EY7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 AC087393.1-201ENST00000582896 145 ntBASIC22.74■■□□□ 1.23
PTCD3Q96EY7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 FOXO3B-201ENST00000395675 1928 ntBASIC22.74■■□□□ 1.23
PTCD3Q96EY7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTCD3Q96EY7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 LINC00565-201ENST00000562710 2331 ntBASIC22.73■■□□□ 1.23
PTCD3Q96EY7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCD3Q96EY7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCD3Q96EY7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 MIR6089-201ENST00000616698 64 ntBASIC22.71■■□□□ 1.23
PTCD3Q96EY7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCD3Q96EY7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.7■■□□□ 1.23
PTCD3Q96EY7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
PTCD3Q96EY7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.7■■□□□ 1.23
PTCD3Q96EY7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 AC233723.2-201ENST00000623798 2106 ntBASIC22.7■■□□□ 1.22
PTCD3Q96EY7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.7■■□□□ 1.22
PTCD3Q96EY7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCD3Q96EY7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms