Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NIPAL3Q6P499 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
NIPAL3Q6P499 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NIPAL3Q6P499 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
NIPAL3Q6P499 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
NIPAL3Q6P499 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NIPAL3Q6P499 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NIPAL3Q6P499 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NIPAL3Q6P499 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NIPAL3Q6P499 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.85■□□□□ 0.93
NIPAL3Q6P499 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
NIPAL3Q6P499 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NIPAL3Q6P499 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.85■□□□□ 0.93
NIPAL3Q6P499 KRT8P33-201ENST00000508125 1423 ntBASIC20.85■□□□□ 0.93
NIPAL3Q6P499 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NIPAL3Q6P499 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NIPAL3Q6P499 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NIPAL3Q6P499 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 AC022616.5-201ENST00000518796 181 ntBASIC20.83■□□□□ 0.93
NIPAL3Q6P499 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.83■□□□□ 0.93
NIPAL3Q6P499 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.83■□□□□ 0.92
NIPAL3Q6P499 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NIPAL3Q6P499 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NIPAL3Q6P499 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NIPAL3Q6P499 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.82■□□□□ 0.92
NIPAL3Q6P499 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NIPAL3Q6P499 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NIPAL3Q6P499 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NIPAL3Q6P499 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NIPAL3Q6P499 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 YBX1P4-201ENST00000392794 808 ntBASIC20.8■□□□□ 0.92
NIPAL3Q6P499 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.8■□□□□ 0.92
NIPAL3Q6P499 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.79■□□□□ 0.92
NIPAL3Q6P499 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.79■□□□□ 0.92
NIPAL3Q6P499 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NIPAL3Q6P499 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NIPAL3Q6P499 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms