Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNFT1Q5M7Z0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNFT1Q5M7Z0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNFT1Q5M7Z0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.83■□□□□ 0.93
RNFT1Q5M7Z0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
RNFT1Q5M7Z0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.83■□□□□ 0.93
RNFT1Q5M7Z0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
RNFT1Q5M7Z0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.83■□□□□ 0.92
RNFT1Q5M7Z0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RNFT1Q5M7Z0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.82■□□□□ 0.92
RNFT1Q5M7Z0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNFT1Q5M7Z0 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 AL136162.1-201ENST00000607711 1078 ntBASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNFT1Q5M7Z0 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 AL022069.1-201ENST00000568025 1636 ntBASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
RNFT1Q5M7Z0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 AL031432.3-201ENST00000607698 485 ntBASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNFT1Q5M7Z0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 AC024257.2-201ENST00000549699 147 ntBASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNFT1Q5M7Z0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RNFT1Q5M7Z0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RNFT1Q5M7Z0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 HLA-L-211ENST00000482052 1765 ntBASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 AC135279.3-201ENST00000610945 1311 ntBASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNFT1Q5M7Z0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNFT1Q5M7Z0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms