Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC010980.1-201ENST00000587192 1142 ntBASIC25.22■■□□□ 1.63
CCDC40Q4G0X9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 PVT1_1.1-201ENST00000615125 194 ntBASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC40Q4G0X9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC40Q4G0X9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC40Q4G0X9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC40Q4G0X9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC40Q4G0X9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CCDC40Q4G0X9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC40Q4G0X9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.18■■□□□ 1.62
CCDC40Q4G0X9 AL033527.3-201ENST00000566366 1196 ntBASIC25.18■■□□□ 1.62
CCDC40Q4G0X9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC40Q4G0X9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC40Q4G0X9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 AC120024.1-201ENST00000562672 995 ntBASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC40Q4G0X9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 AL161729.1-201ENST00000604104 1402 ntBASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC40Q4G0X9 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 AL022069.1-201ENST00000568025 1636 ntBASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.15■■□□□ 1.62
CCDC40Q4G0X9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC40Q4G0X9 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25.14■■□□□ 1.62
CCDC40Q4G0X9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.14■■□□□ 1.62
CCDC40Q4G0X9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.14■■□□□ 1.62
CCDC40Q4G0X9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC40Q4G0X9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC40Q4G0X9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC40Q4G0X9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC40Q4G0X9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC40Q4G0X9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC40Q4G0X9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 THA1P-201ENST00000590384 1145 ntBASIC25.12■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms