Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 AC024257.2-201ENST00000549699 147 ntBASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 AC005703.6-201ENST00000623265 1329 ntBASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 REST-206ENST00000612429 1376 ntTSL 5 BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 REST-207ENST00000616975 1370 ntTSL 5 BASIC27.08■■□□□ 1.93
SHROOM1Q2M3G4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
SHROOM1Q2M3G4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 SRD5A1P1-201ENST00000442297 786 ntBASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM1Q2M3G4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM1Q2M3G4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM1Q2M3G4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM1Q2M3G4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM1Q2M3G4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM1Q2M3G4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM1Q2M3G4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC27.05■■□□□ 1.92
SHROOM1Q2M3G4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 SUDS3P1-201ENST00000505831 966 ntBASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM1Q2M3G4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 AC135279.3-201ENST00000610945 1311 ntBASIC27.03■■□□□ 1.92
SHROOM1Q2M3G4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM1Q2M3G4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM1Q2M3G4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.02■■□□□ 1.92
SHROOM1Q2M3G4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC27.02■■□□□ 1.92
SHROOM1Q2M3G4 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM1Q2M3G4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
SHROOM1Q2M3G4 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
SHROOM1Q2M3G4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.92
SHROOM1Q2M3G4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM1Q2M3G4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM1Q2M3G4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.01■■□□□ 1.91
SHROOM1Q2M3G4 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM1Q2M3G4 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM1Q2M3G4 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM1Q2M3G4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 HLA-L-211ENST00000482052 1765 ntBASIC27■■□□□ 1.91
SHROOM1Q2M3G4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 AC142381.2-201ENST00000566120 298 ntBASIC27■■□□□ 1.91
SHROOM1Q2M3G4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM1Q2M3G4 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM1Q2M3G4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM1Q2M3G4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.97■■□□□ 1.91
SHROOM1Q2M3G4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM1Q2M3G4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.97■■□□□ 1.91
SHROOM1Q2M3G4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
SHROOM1Q2M3G4 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM1Q2M3G4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms