Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLRN1P58418 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLRN1P58418 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLRN1P58418 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.48■□□□□ 0.87
CLRN1P58418 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.48■□□□□ 0.87
CLRN1P58418 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CLRN1P58418 ABCB10P4-201ENST00000566803 2184 ntBASIC20.48■□□□□ 0.87
CLRN1P58418 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.47■□□□□ 0.87
CLRN1P58418 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN1P58418 AL022069.1-201ENST00000568025 1636 ntBASIC20.47■□□□□ 0.87
CLRN1P58418 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN1P58418 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CLRN1P58418 MIR4281-201ENST00000580852 62 ntBASIC20.47■□□□□ 0.87
CLRN1P58418 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLRN1P58418 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN1P58418 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.47■□□□□ 0.87
CLRN1P58418 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN1P58418 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN1P58418 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN1P58418 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
CLRN1P58418 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.46■□□□□ 0.87
CLRN1P58418 AL161729.1-201ENST00000604104 1402 ntBASIC20.46■□□□□ 0.87
CLRN1P58418 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CLRN1P58418 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN1P58418 AC103834.1-201ENST00000520383 144 ntBASIC20.46■□□□□ 0.87
CLRN1P58418 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN1P58418 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.46■□□□□ 0.87
CLRN1P58418 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CLRN1P58418 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN1P58418 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
CLRN1P58418 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
CLRN1P58418 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.45■□□□□ 0.86
CLRN1P58418 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLRN1P58418 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.45■□□□□ 0.86
CLRN1P58418 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CLRN1P58418 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CLRN1P58418 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CLRN1P58418 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.44■□□□□ 0.86
CLRN1P58418 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.44■□□□□ 0.86
CLRN1P58418 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.44■□□□□ 0.86
CLRN1P58418 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLRN1P58418 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLRN1P58418 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.43■□□□□ 0.86
CLRN1P58418 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLRN1P58418 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.43■□□□□ 0.86
CLRN1P58418 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.43■□□□□ 0.86
CLRN1P58418 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 AC103724.3-201ENST00000564481 992 ntBASIC20.43■□□□□ 0.86
CLRN1P58418 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.43■□□□□ 0.86
CLRN1P58418 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CLRN1P58418 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN1P58418 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.42■□□□□ 0.86
CLRN1P58418 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN1P58418 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN1P58418 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN1P58418 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLRN1P58418 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN1P58418 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CLRN1P58418 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN1P58418 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN1P58418 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.42■□□□□ 0.86
CLRN1P58418 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.41■□□□□ 0.86
CLRN1P58418 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLRN1P58418 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLRN1P58418 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLRN1P58418 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CLRN1P58418 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN1P58418 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN1P58418 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN1P58418 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN1P58418 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.4■□□□□ 0.86
CLRN1P58418 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN1P58418 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.4■□□□□ 0.86
CLRN1P58418 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN1P58418 AL031848.2-201ENST00000607670 837 ntBASIC20.4■□□□□ 0.86
CLRN1P58418 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CLRN1P58418 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLRN1P58418 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLRN1P58418 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLRN1P58418 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.39■□□□□ 0.85
CLRN1P58418 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.39■□□□□ 0.85
CLRN1P58418 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.39■□□□□ 0.85
CLRN1P58418 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.39■□□□□ 0.85
CLRN1P58418 AF131216.4-201ENST00000638924 1588 ntBASIC20.38■□□□□ 0.85
CLRN1P58418 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN1P58418 AC131274.2-201ENST00000580697 1507 ntBASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms