Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 BX664725.1-201ENST00000438252 379 ntBASIC21.84■■□□□ 1.09
LIM2P55344 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LIM2P55344 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LIM2P55344 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.84■■□□□ 1.09
LIM2P55344 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.84■■□□□ 1.09
LIM2P55344 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LIM2P55344 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LIM2P55344 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.84■■□□□ 1.09
LIM2P55344 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIM2P55344 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
LIM2P55344 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LIM2P55344 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.83■■□□□ 1.09
LIM2P55344 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LIM2P55344 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIM2P55344 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.83■■□□□ 1.09
LIM2P55344 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
LIM2P55344 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LIM2P55344 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
LIM2P55344 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.83■■□□□ 1.08
LIM2P55344 AC141586.4-201ENST00000624558 1573 ntBASIC21.82■■□□□ 1.08
LIM2P55344 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.82■■□□□ 1.08
LIM2P55344 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIM2P55344 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIM2P55344 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIM2P55344 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
LIM2P55344 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.82■■□□□ 1.08
LIM2P55344 Z92544.1-202ENST00000571933 1220 ntBASIC21.82■■□□□ 1.08
LIM2P55344 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIM2P55344 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIM2P55344 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIM2P55344 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.82■■□□□ 1.08
LIM2P55344 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.81■■□□□ 1.08
LIM2P55344 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
LIM2P55344 AC131274.2-201ENST00000580697 1507 ntBASIC21.81■■□□□ 1.08
LIM2P55344 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIM2P55344 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.81■■□□□ 1.08
LIM2P55344 AL035685.1-201ENST00000636663 812 ntBASIC21.81■■□□□ 1.08
LIM2P55344 AC021242.3-201ENST00000607598 1377 ntBASIC21.81■■□□□ 1.08
LIM2P55344 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIM2P55344 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIM2P55344 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LIM2P55344 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIM2P55344 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIM2P55344 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIM2P55344 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.8■■□□□ 1.08
LIM2P55344 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIM2P55344 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIM2P55344 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.8■■□□□ 1.08
LIM2P55344 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.8■■□□□ 1.08
LIM2P55344 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIM2P55344 AL022069.1-201ENST00000568025 1636 ntBASIC21.8■■□□□ 1.08
LIM2P55344 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LIM2P55344 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.79■■□□□ 1.08
LIM2P55344 AC239859.2-201ENST00000444165 318 ntBASIC21.79■■□□□ 1.08
LIM2P55344 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.79■■□□□ 1.08
LIM2P55344 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIM2P55344 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LIM2P55344 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.78■■□□□ 1.08
LIM2P55344 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
LIM2P55344 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
LIM2P55344 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.78■■□□□ 1.08
LIM2P55344 KRT125P-201ENST00000546827 989 ntBASIC21.78■■□□□ 1.08
LIM2P55344 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.78■■□□□ 1.08
LIM2P55344 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIM2P55344 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIM2P55344 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.77■■□□□ 1.08
LIM2P55344 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
LIM2P55344 AL161729.1-201ENST00000604104 1402 ntBASIC21.77■■□□□ 1.08
LIM2P55344 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LIM2P55344 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIM2P55344 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.76■■□□□ 1.07
LIM2P55344 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.76■■□□□ 1.07
LIM2P55344 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.76■■□□□ 1.07
LIM2P55344 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.76■■□□□ 1.07
LIM2P55344 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.76■■□□□ 1.07
LIM2P55344 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.76■■□□□ 1.07
LIM2P55344 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIM2P55344 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIM2P55344 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
LIM2P55344 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.75■■□□□ 1.07
LIM2P55344 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIM2P55344 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.75■■□□□ 1.07
LIM2P55344 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIM2P55344 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.75■■□□□ 1.07
LIM2P55344 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.75■■□□□ 1.07
LIM2P55344 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.75■■□□□ 1.07
LIM2P55344 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms