Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.93■■□□□ 1.9
CTCFP49711 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.92■■□□□ 1.9
CTCFP49711 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.92■■□□□ 1.9
CTCFP49711 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CTCFP49711 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CTCFP49711 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC26.92■■□□□ 1.9
CTCFP49711 ARL16-209ENST00000573715 763 ntTSL 3 BASIC26.92■■□□□ 1.9
CTCFP49711 ARL16-211ENST00000576135 694 ntTSL 3 BASIC26.92■■□□□ 1.9
CTCFP49711 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.92■■□□□ 1.9
CTCFP49711 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
CTCFP49711 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC26.91■■□□□ 1.9
CTCFP49711 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CTCFP49711 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC26.91■■□□□ 1.9
CTCFP49711 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC26.91■■□□□ 1.9
CTCFP49711 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC26.91■■□□□ 1.9
CTCFP49711 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CTCFP49711 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CTCFP49711 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CTCFP49711 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC26.91■■□□□ 1.9
CTCFP49711 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CTCFP49711 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CTCFP49711 CDCA4P2-201ENST00000441182 718 ntBASIC26.9■■□□□ 1.9
CTCFP49711 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.9■■□□□ 1.9
CTCFP49711 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.9■■□□□ 1.9
CTCFP49711 AL139393.2-201ENST00000608721 2025 ntBASIC26.9■■□□□ 1.9
CTCFP49711 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CTCFP49711 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CTCFP49711 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
CTCFP49711 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.89■■□□□ 1.9
CTCFP49711 PPP1R14BP3-201ENST00000509033 445 ntBASIC26.89■■□□□ 1.9
CTCFP49711 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CTCFP49711 AL109923.1-201ENST00000618799 583 ntBASIC26.89■■□□□ 1.9
CTCFP49711 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.89
CTCFP49711 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CTCFP49711 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CTCFP49711 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC26.88■■□□□ 1.89
CTCFP49711 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC26.88■■□□□ 1.89
CTCFP49711 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC26.88■■□□□ 1.89
CTCFP49711 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CTCFP49711 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.88■■□□□ 1.89
CTCFP49711 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.88■■□□□ 1.89
CTCFP49711 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CTCFP49711 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CTCFP49711 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
CTCFP49711 MAP2K4P1-201ENST00000438453 1195 ntBASIC26.87■■□□□ 1.89
CTCFP49711 AC093827.2-201ENST00000512654 315 ntBASIC26.87■■□□□ 1.89
CTCFP49711 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC26.87■■□□□ 1.89
CTCFP49711 AC073111.5-205ENST00000641717 521 ntBASIC26.87■■□□□ 1.89
CTCFP49711 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CTCFP49711 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
CTCFP49711 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.86■■□□□ 1.89
CTCFP49711 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CTCFP49711 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CTCFP49711 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CTCFP49711 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CTCFP49711 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
CTCFP49711 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CTCFP49711 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC26.86■■□□□ 1.89
CTCFP49711 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.86■■□□□ 1.89
CTCFP49711 KRT18P14-201ENST00000534205 1250 ntBASIC26.86■■□□□ 1.89
CTCFP49711 AC126544.1-201ENST00000580842 1059 ntBASIC26.86■■□□□ 1.89
CTCFP49711 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CTCFP49711 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.85■■□□□ 1.89
CTCFP49711 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
CTCFP49711 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CTCFP49711 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC26.85■■□□□ 1.89
CTCFP49711 AL499627.2-201ENST00000606283 725 ntBASIC26.85■■□□□ 1.89
CTCFP49711 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC26.85■■□□□ 1.89
CTCFP49711 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
CTCFP49711 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
CTCFP49711 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CTCFP49711 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC26.84■■□□□ 1.89
CTCFP49711 AC026185.1-201ENST00000445748 174 ntBASIC26.84■■□□□ 1.89
CTCFP49711 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC26.84■■□□□ 1.89
CTCFP49711 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CTCFP49711 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.84■■□□□ 1.89
CTCFP49711 TSPY26P-201ENST00000476365 1326 ntBASIC26.84■■□□□ 1.89
CTCFP49711 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
CTCFP49711 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CTCFP49711 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
CTCFP49711 MIR6084-201ENST00000622012 110 ntBASIC26.83■■□□□ 1.89
CTCFP49711 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.83■■□□□ 1.89
CTCFP49711 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.83■■□□□ 1.88
CTCFP49711 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CTCFP49711 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
CTCFP49711 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CTCFP49711 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC26.82■■□□□ 1.88
CTCFP49711 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CTCFP49711 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.81■■□□□ 1.88
CTCFP49711 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.81■■□□□ 1.88
CTCFP49711 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CTCFP49711 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC26.81■■□□□ 1.88
CTCFP49711 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CTCFP49711 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
CTCFP49711 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CTCFP49711 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC26.81■■□□□ 1.88
CTCFP49711 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC26.81■■□□□ 1.88
CTCFP49711 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
CTCFP49711 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC26.81■■□□□ 1.88
CTCFP49711 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms