Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTPN9P43378 AC004448.1-201ENST00000458332 883 ntBASIC23.98■■□□□ 1.43
PTPN9P43378 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PTPN9P43378 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTPN9P43378 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTPN9P43378 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTPN9P43378 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTPN9P43378 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
PTPN9P43378 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
PTPN9P43378 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTPN9P43378 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.97■■□□□ 1.43
PTPN9P43378 AC021242.3-201ENST00000607598 1377 ntBASIC23.97■■□□□ 1.43
PTPN9P43378 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTPN9P43378 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
PTPN9P43378 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
PTPN9P43378 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTPN9P43378 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.96■■□□□ 1.43
PTPN9P43378 BX664725.1-201ENST00000438252 379 ntBASIC23.96■■□□□ 1.43
PTPN9P43378 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.96■■□□□ 1.43
PTPN9P43378 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.96■■□□□ 1.43
PTPN9P43378 AL451085.2-201ENST00000605085 799 ntBASIC23.96■■□□□ 1.43
PTPN9P43378 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
PTPN9P43378 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTPN9P43378 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTPN9P43378 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTPN9P43378 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTPN9P43378 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTPN9P43378 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
PTPN9P43378 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PTPN9P43378 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
PTPN9P43378 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
PTPN9P43378 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.95■■□□□ 1.42
PTPN9P43378 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.95■■□□□ 1.42
PTPN9P43378 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.95■■□□□ 1.42
PTPN9P43378 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.95■■□□□ 1.42
PTPN9P43378 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 ABCB10P4-201ENST00000566803 2184 ntBASIC23.95■■□□□ 1.42
PTPN9P43378 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTPN9P43378 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.95■■□□□ 1.42
PTPN9P43378 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.95■■□□□ 1.42
PTPN9P43378 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PTPN9P43378 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PTPN9P43378 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.94■■□□□ 1.42
PTPN9P43378 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.94■■□□□ 1.42
PTPN9P43378 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.94■■□□□ 1.42
PTPN9P43378 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.94■■□□□ 1.42
PTPN9P43378 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.94■■□□□ 1.42
PTPN9P43378 Z92544.1-202ENST00000571933 1220 ntBASIC23.94■■□□□ 1.42
PTPN9P43378 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.94■■□□□ 1.42
PTPN9P43378 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
PTPN9P43378 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.94■■□□□ 1.42
PTPN9P43378 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PTPN9P43378 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
PTPN9P43378 AC009299.2-201ENST00000482477 511 ntBASIC23.93■■□□□ 1.42
PTPN9P43378 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.93■■□□□ 1.42
PTPN9P43378 SNX5-217ENST00000606557 1087 ntBASIC23.93■■□□□ 1.42
PTPN9P43378 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PTPN9P43378 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTPN9P43378 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.92■■□□□ 1.42
PTPN9P43378 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTPN9P43378 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTPN9P43378 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.91■■□□□ 1.42
PTPN9P43378 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.91■■□□□ 1.42
PTPN9P43378 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.91■■□□□ 1.42
PTPN9P43378 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.91■■□□□ 1.42
PTPN9P43378 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.91■■□□□ 1.42
PTPN9P43378 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTPN9P43378 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PTPN9P43378 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
PTPN9P43378 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
PTPN9P43378 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
PTPN9P43378 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.9■■□□□ 1.42
PTPN9P43378 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.9■■□□□ 1.42
PTPN9P43378 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PTPN9P43378 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PTPN9P43378 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
PTPN9P43378 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PTPN9P43378 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.9■■□□□ 1.42
PTPN9P43378 ALDH1A3-203ENST00000557963 1670 ntBASIC23.89■■□□□ 1.42
PTPN9P43378 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.89■■□□□ 1.41
PTPN9P43378 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
PTPN9P43378 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.89■■□□□ 1.41
PTPN9P43378 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.89■■□□□ 1.41
PTPN9P43378 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PTPN9P43378 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PTPN9P43378 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PTPN9P43378 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms