Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL1P09341 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CXCL1P09341 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL1P09341 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.79■□□□□ 0.44
CXCL1P09341 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL1P09341 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC17.79■□□□□ 0.44
CXCL1P09341 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL1P09341 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL1P09341 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CXCL1P09341 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CXCL1P09341 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CXCL1P09341 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
CXCL1P09341 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CXCL1P09341 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.78■□□□□ 0.44
CXCL1P09341 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.78■□□□□ 0.44
CXCL1P09341 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
CXCL1P09341 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CXCL1P09341 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL1P09341 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CXCL1P09341 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CXCL1P09341 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC17.77■□□□□ 0.44
CXCL1P09341 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL1P09341 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CXCL1P09341 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CXCL1P09341 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.77■□□□□ 0.43
CXCL1P09341 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CXCL1P09341 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.76■□□□□ 0.43
CXCL1P09341 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL1P09341 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 AC087741.3-201ENST00000624270 1347 ntBASIC17.76■□□□□ 0.43
CXCL1P09341 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.76■□□□□ 0.43
CXCL1P09341 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC17.76■□□□□ 0.43
CXCL1P09341 AC044849.2-201ENST00000606596 710 ntBASIC17.76■□□□□ 0.43
CXCL1P09341 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL1P09341 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CXCL1P09341 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL1P09341 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL1P09341 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC17.75■□□□□ 0.43
CXCL1P09341 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.75■□□□□ 0.43
CXCL1P09341 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
CXCL1P09341 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.75■□□□□ 0.43
CXCL1P09341 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CXCL1P09341 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL1P09341 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL1P09341 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CXCL1P09341 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL1P09341 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CXCL1P09341 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC17.74■□□□□ 0.43
CXCL1P09341 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL1P09341 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CXCL1P09341 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.73■□□□□ 0.43
CXCL1P09341 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL1P09341 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CXCL1P09341 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL1P09341 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CXCL1P09341 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CXCL1P09341 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL1P09341 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CXCL1P09341 PKD1P6-201ENST00000343738 4769 ntBASIC17.73■□□□□ 0.43
CXCL1P09341 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CXCL1P09341 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CXCL1P09341 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL1P09341 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL1P09341 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.72■□□□□ 0.43
CXCL1P09341 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms