Protein–RNA interactions for Protein: O95832

CLDN1, Claudin-1, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1O95832 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN1O95832 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN1O95832 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN1O95832 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN1O95832 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN1O95832 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN1O95832 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.49■□□□□ 0.87
CLDN1O95832 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.49■□□□□ 0.87
CLDN1O95832 AC008764.7-201ENST00000593779 1081 ntBASIC20.49■□□□□ 0.87
CLDN1O95832 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.49■□□□□ 0.87
CLDN1O95832 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN1O95832 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN1O95832 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CLDN1O95832 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.49■□□□□ 0.87
CLDN1O95832 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.48■□□□□ 0.87
CLDN1O95832 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CLDN1O95832 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.48■□□□□ 0.87
CLDN1O95832 AC135731.1-201ENST00000569415 2548 ntBASIC20.48■□□□□ 0.87
CLDN1O95832 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.48■□□□□ 0.87
CLDN1O95832 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN1O95832 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN1O95832 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN1O95832 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN1O95832 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CLDN1O95832 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.47■□□□□ 0.87
CLDN1O95832 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.47■□□□□ 0.87
CLDN1O95832 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.47■□□□□ 0.87
CLDN1O95832 AC092437.1-201ENST00000624794 1048 ntBASIC20.47■□□□□ 0.87
CLDN1O95832 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN1O95832 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN1O95832 ID1-201ENST00000376105 1233 ntBASIC20.46■□□□□ 0.87
CLDN1O95832 SERBP1P1-201ENST00000396021 1160 ntBASIC20.46■□□□□ 0.87
CLDN1O95832 AC034268.1-201ENST00000441047 882 ntBASIC20.46■□□□□ 0.87
CLDN1O95832 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN1O95832 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN1O95832 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.46■□□□□ 0.87
CLDN1O95832 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CLDN1O95832 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN1O95832 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN1O95832 AC099791.1-201ENST00000416440 715 ntBASIC20.45■□□□□ 0.86
CLDN1O95832 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN1O95832 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.45■□□□□ 0.86
CLDN1O95832 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.45■□□□□ 0.86
CLDN1O95832 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN1O95832 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN1O95832 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN1O95832 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN1O95832 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN1O95832 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
CLDN1O95832 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.44■□□□□ 0.86
CLDN1O95832 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.44■□□□□ 0.86
CLDN1O95832 KRT18P5-201ENST00000436075 1291 ntBASIC20.44■□□□□ 0.86
CLDN1O95832 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CLDN1O95832 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN1O95832 AC092171.4-201ENST00000609130 632 ntBASIC20.44■□□□□ 0.86
CLDN1O95832 AC142472.1-201ENST00000612013 1741 ntBASIC20.44■□□□□ 0.86
CLDN1O95832 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CLDN1O95832 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN1O95832 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN1O95832 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CLDN1O95832 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN1O95832 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.43■□□□□ 0.86
CLDN1O95832 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN1O95832 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.43■□□□□ 0.86
CLDN1O95832 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN1O95832 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLDN1O95832 SLC47A1P1-202ENST00000449666 945 ntBASIC20.42■□□□□ 0.86
CLDN1O95832 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN1O95832 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN1O95832 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CLDN1O95832 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN1O95832 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN1O95832 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN1O95832 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLDN1O95832 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
CLDN1O95832 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN1O95832 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN1O95832 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.41■□□□□ 0.86
CLDN1O95832 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN1O95832 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.41■□□□□ 0.86
CLDN1O95832 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN1O95832 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN1O95832 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN1O95832 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN1O95832 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN1O95832 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms