Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MIR6722-201ENST00000617286 78 ntBASIC26.01■■□□□ 1.75
MSH4O15457 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.01■■□□□ 1.75
MSH4O15457 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26■■□□□ 1.75
MSH4O15457 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
MSH4O15457 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26■■□□□ 1.75
MSH4O15457 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26■■□□□ 1.75
MSH4O15457 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26■■□□□ 1.75
MSH4O15457 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26■■□□□ 1.75
MSH4O15457 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
MSH4O15457 AL139125.2-201ENST00000623134 1869 ntBASIC26■■□□□ 1.75
MSH4O15457 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26■■□□□ 1.75
MSH4O15457 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
MSH4O15457 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
MSH4O15457 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.99■■□□□ 1.75
MSH4O15457 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
MSH4O15457 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.99■■□□□ 1.75
MSH4O15457 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.99■■□□□ 1.75
MSH4O15457 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
MSH4O15457 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.98■■□□□ 1.75
MSH4O15457 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH4O15457 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH4O15457 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH4O15457 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.98■■□□□ 1.75
MSH4O15457 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.98■■□□□ 1.75
MSH4O15457 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
MSH4O15457 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH4O15457 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.98■■□□□ 1.75
MSH4O15457 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH4O15457 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
MSH4O15457 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH4O15457 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.97■■□□□ 1.75
MSH4O15457 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
MSH4O15457 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
MSH4O15457 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH4O15457 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH4O15457 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH4O15457 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH4O15457 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH4O15457 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH4O15457 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH4O15457 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.96■■□□□ 1.75
MSH4O15457 MIR6724-1-201ENST00000616420 92 ntBASIC25.96■■□□□ 1.75
MSH4O15457 MIR6724-2-201ENST00000616483 92 ntBASIC25.96■■□□□ 1.75
MSH4O15457 MIR6724-4-201ENST00000617390 92 ntBASIC25.96■■□□□ 1.75
MSH4O15457 MIR6724-3-201ENST00000622482 92 ntBASIC25.96■■□□□ 1.75
MSH4O15457 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH4O15457 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH4O15457 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH4O15457 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH4O15457 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH4O15457 AC131212.1-201ENST00000613771 668 ntBASIC25.95■■□□□ 1.74
MSH4O15457 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.95■■□□□ 1.74
MSH4O15457 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
MSH4O15457 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH4O15457 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
MSH4O15457 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
MSH4O15457 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
MSH4O15457 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.94■■□□□ 1.74
MSH4O15457 AL161729.1-201ENST00000604104 1402 ntBASIC25.94■■□□□ 1.74
MSH4O15457 LINC01124-201ENST00000409786 2117 ntBASIC25.94■■□□□ 1.74
MSH4O15457 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
MSH4O15457 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH4O15457 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH4O15457 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH4O15457 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
MSH4O15457 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH4O15457 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.92■■□□□ 1.74
MSH4O15457 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.92■■□□□ 1.74
MSH4O15457 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH4O15457 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.92■■□□□ 1.74
MSH4O15457 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.91■■□□□ 1.74
MSH4O15457 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.91■■□□□ 1.74
MSH4O15457 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH4O15457 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH4O15457 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.9■■□□□ 1.74
MSH4O15457 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.9■■□□□ 1.74
MSH4O15457 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
MSH4O15457 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.89■■□□□ 1.74
MSH4O15457 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.89■■□□□ 1.74
MSH4O15457 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MSH4O15457 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH4O15457 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.89■■□□□ 1.74
MSH4O15457 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH4O15457 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.89■■□□□ 1.74
MSH4O15457 AL117332.1-201ENST00000622628 974 ntBASIC25.89■■□□□ 1.74
MSH4O15457 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.89■■□□□ 1.74
MSH4O15457 LINC00543-201ENST00000567234 1845 ntBASIC25.88■■□□□ 1.73
MSH4O15457 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH4O15457 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH4O15457 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
MSH4O15457 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH4O15457 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH4O15457 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms