Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGN4O00479 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGN4O00479 ATP5G2P3-201ENST00000429083 425 ntBASIC21.43■■□□□ 1.02
HMGN4O00479 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGN4O00479 AC022616.5-201ENST00000518796 181 ntBASIC21.43■■□□□ 1.02
HMGN4O00479 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
HMGN4O00479 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGN4O00479 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGN4O00479 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGN4O00479 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGN4O00479 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGN4O00479 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGN4O00479 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGN4O00479 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGN4O00479 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
HMGN4O00479 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
HMGN4O00479 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
HMGN4O00479 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGN4O00479 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
HMGN4O00479 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGN4O00479 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGN4O00479 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGN4O00479 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGN4O00479 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGN4O00479 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGN4O00479 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGN4O00479 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
HMGN4O00479 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGN4O00479 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
HMGN4O00479 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGN4O00479 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.4■■□□□ 1.02
HMGN4O00479 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGN4O00479 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGN4O00479 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGN4O00479 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGN4O00479 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.4■■□□□ 1.02
HMGN4O00479 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGN4O00479 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGN4O00479 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGN4O00479 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGN4O00479 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGN4O00479 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
HMGN4O00479 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGN4O00479 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.39■■□□□ 1.02
HMGN4O00479 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.39■■□□□ 1.02
HMGN4O00479 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.39■■□□□ 1.02
HMGN4O00479 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGN4O00479 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGN4O00479 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGN4O00479 BHLHE23-202ENST00000612929 1109 ntBASIC21.39■■□□□ 1.01
HMGN4O00479 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGN4O00479 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGN4O00479 AL022069.1-201ENST00000568025 1636 ntBASIC21.39■■□□□ 1.01
HMGN4O00479 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGN4O00479 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
HMGN4O00479 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGN4O00479 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGN4O00479 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 AC133561.1-201ENST00000568600 2415 ntBASIC21.38■■□□□ 1.01
HMGN4O00479 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.38■■□□□ 1.01
HMGN4O00479 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGN4O00479 PVT1_1.1-201ENST00000615125 194 ntBASIC21.38■■□□□ 1.01
HMGN4O00479 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.38■■□□□ 1.01
HMGN4O00479 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
HMGN4O00479 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGN4O00479 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.37■■□□□ 1.01
HMGN4O00479 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGN4O00479 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGN4O00479 TSPY13P-201ENST00000338964 914 ntBASIC21.37■■□□□ 1.01
HMGN4O00479 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
HMGN4O00479 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.37■■□□□ 1.01
HMGN4O00479 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGN4O00479 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGN4O00479 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.37■■□□□ 1.01
HMGN4O00479 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGN4O00479 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HMGN4O00479 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.36■■□□□ 1.01
HMGN4O00479 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.36■■□□□ 1.01
HMGN4O00479 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HMGN4O00479 AC131274.2-201ENST00000580697 1507 ntBASIC21.36■■□□□ 1.01
HMGN4O00479 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.36■■□□□ 1.01
HMGN4O00479 AC074183.2-201ENST00000623112 922 ntBASIC21.36■■□□□ 1.01
HMGN4O00479 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.36■■□□□ 1.01
HMGN4O00479 AC068473.5-201ENST00000616428 2072 ntBASIC21.36■■□□□ 1.01
HMGN4O00479 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HMGN4O00479 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGN4O00479 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGN4O00479 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGN4O00479 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGN4O00479 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.35■■□□□ 1.01
HMGN4O00479 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.35■■□□□ 1.01
HMGN4O00479 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
HMGN4O00479 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGN4O00479 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms