Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-1A0A0B4J248 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
TRAV1-1A0A0B4J248 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV1-1A0A0B4J248 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV1-1A0A0B4J248 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV1-1A0A0B4J248 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.02■□□□□ 0.47
TRAV1-1A0A0B4J248 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV1-1A0A0B4J248 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 SLC25A24-204ENST00000569674 2357 ntBASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 AC148477.6-201ENST00000623746 465 ntBASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV1-1A0A0B4J248 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 AL137060.1-201ENST00000618151 2648 ntBASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-1A0A0B4J248 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 ESRRAP2-201ENST00000418437 1549 ntBASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-1A0A0B4J248 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 AC008813.1-201ENST00000536597 885 ntBASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-1A0A0B4J248 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV1-1A0A0B4J248 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TRAV1-1A0A0B4J248 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRAV1-1A0A0B4J248 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms