Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 PGAM1P5-201ENST00000548011 764 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC242376.1-201ENST00000559033 726 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC008825.2-201ENST00000603374 718 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC011491.1-203ENST00000637688 543 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC023824.1-201ENST00000562945 2975 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AC092364.2-201ENST00000596710 2692 ntBASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 RPL18P13-201ENST00000478088 569 ntBASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 RTN3P1-201ENST00000536295 711 ntBASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 MIR4783-201ENST00000580343 82 ntBASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AC073352.2-201ENST00000609385 439 ntBASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
PCDHGA1Q9Y5H4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
PCDHGA1Q9Y5H4 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms